Protein Function Prediction

14 benchmarks79 papers

For GO terms prediction, given the specific function prediction instruction and a protein sequence, models characterize the protein functions using the GO terms presented in three different domains (cellular component, biological process, and molecular function).

Benchmarks

Protein Function Prediction on MIPE

AUC-PRAUC-ROC

Protein Function Prediction on CASPSimSeq

ROUGE-L

Protein Function Prediction on PECAN

AUC-PRAUC-ROC

Protein Function Prediction on PaenSeq

ROUGE-L

Protein Function Prediction on UniProtSeq

ROUGE-L

Protein Function Prediction on Paragraph Expanded

AUC-PRAUC-ROC

Protein Function Prediction on Antibody sequences against Sars-Cov-2 and Omicron BA.1

Accuracy (5-fold)Precision (5-fold)Recall (5-fold)Selectivity (5-fold)NPV (5-fold)