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Papers/Self-Prompting Polyp Segmentation in Colonoscopy using Hyb...

Self-Prompting Polyp Segmentation in Colonoscopy using Hybrid Yolo-SAM 2 Model

Mobina Mansoori, Sajjad Shahabodini, Jamshid Abouei, Konstantinos N. Plataniotis, Arash Mohammadi

2024-09-14Video Polyp SegmentationPolyp SegmentationSegmentationMedical Image SegmentationVideo SegmentationVideo Semantic Segmentation
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Abstract

Early diagnosis and treatment of polyps during colonoscopy are essential for reducing the incidence and mortality of Colorectal Cancer (CRC). However, the variability in polyp characteristics and the presence of artifacts in colonoscopy images and videos pose significant challenges for accurate and efficient polyp detection and segmentation. This paper presents a novel approach to polyp segmentation by integrating the Segment Anything Model (SAM 2) with the YOLOv8 model. Our method leverages YOLOv8's bounding box predictions to autonomously generate input prompts for SAM 2, thereby reducing the need for manual annotations. We conducted exhaustive tests on five benchmark colonoscopy image datasets and two colonoscopy video datasets, demonstrating that our method exceeds state-of-the-art models in both image and video segmentation tasks. Notably, our approach achieves high segmentation accuracy using only bounding box annotations, significantly reducing annotation time and effort. This advancement holds promise for enhancing the efficiency and scalability of polyp detection in clinical settings https://github.com/sajjad-sh33/YOLO_SAM2.

Results

TaskDatasetMetricValueModel
Medical Image SegmentationKvasir-SEGmIoU0.764Yolo-SAM 2
Medical Image SegmentationKvasir-SEGmean Dice0.866Yolo-SAM 2
Medical Image SegmentationCVC-ClinicDBmIoU0.909Yolo-SAM 2
Medical Image SegmentationCVC-ClinicDBmean Dice0.951Yolo-SAM 2
Medical Image SegmentationSUN-SEG-Easy (Unseen)Dice0.9YOLO-SAM 2
Medical Image SegmentationSUN-SEG-Easy (Unseen)S measure0.9YOLO-SAM 2
Medical Image SegmentationSUN-SEG-Easy (Unseen)Sensitivity83.7YOLO-SAM 2
Medical Image SegmentationSUN-SEG-Easy (Unseen)mean E-measure93.8YOLO-SAM 2
Medical Image SegmentationSUN-SEG-Easy (Unseen)mean F-measure93.8YOLO-SAM 2
Medical Image SegmentationSUN-SEG-Hard (Unseen)Dice0.902YOLO-SAM 2
Medical Image SegmentationSUN-SEG-Hard (Unseen)S-Measure0.894YOLO-SAM 2
Medical Image SegmentationSUN-SEG-Hard (Unseen)Sensitivity0.852YOLO-SAM 2
Medical Image SegmentationSUN-SEG-Hard (Unseen)mean E-measure0.941YOLO-SAM 2
Medical Image SegmentationSUN-SEG-Hard (Unseen)mean F-measure0.932YOLO-SAM 2
Semantic SegmentationPolypGenDice0.808YOlO-SAM 2
Semantic SegmentationPolypGenPrecision0.858YOlO-SAM 2
Semantic SegmentationPolypGenRecall0.764YOlO-SAM 2
Semantic SegmentationPolypGenmIoU0.678YOlO-SAM 2
10-shot image generationPolypGenDice0.808YOlO-SAM 2
10-shot image generationPolypGenPrecision0.858YOlO-SAM 2
10-shot image generationPolypGenRecall0.764YOlO-SAM 2
10-shot image generationPolypGenmIoU0.678YOlO-SAM 2

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