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Papers/A Bayesian Flow Network Framework for Chemistry Tasks

A Bayesian Flow Network Framework for Chemistry Tasks

Nianze Tao, Minori Abe

2024-07-28Molecular Property PredictionText-based de novo Molecule GenerationLanguage Modelling
PaperPDFCode(official)

Abstract

In this work, we introduce ChemBFN, a language model that handles chemistry tasks based on Bayesian flow networks working on discrete data. A new accuracy schedule is proposed to improve the sampling quality by significantly reducing the reconstruction loss. We show evidence that our method is appropriate for generating molecules with satisfied diversity even when a smaller number of sampling steps is used. A classifier-free guidance method is adapted for conditional generation. It is also worthwhile to point out that after generative training, our model can be fine-tuned on regression and classification tasks with the state-of-the-art performance, which opens the gate of building all-in-one models in a single module style. Our model has been open sourced at https://github.com/Augus1999/bayesian-flow-network-for-chemistry.

Results

TaskDatasetMetricValueModel
Molecular Property PredictionFreeSolvRMSE1.418ChemBFN
Molecular Property PredictionclintoxROC-AUC99.18ChemBFN
Molecular Property PredictionLipophilicityRMSE0.746ChemBFN
Molecular Property PredictionHIVROC-AUC79.37ChemBFN
Molecular Property PredictionBBBPROC-AUC95.74ChemBFN
Molecular Property PredictionHIV datasetAUC0.794ChemBFN
Molecular Property PredictionBACEROC-AUC73.56ChemBFN
Molecular Property PredictionESOLRMSE0.884ChemBFN
Atomistic DescriptionFreeSolvRMSE1.418ChemBFN
Atomistic DescriptionclintoxROC-AUC99.18ChemBFN
Atomistic DescriptionLipophilicityRMSE0.746ChemBFN
Atomistic DescriptionHIVROC-AUC79.37ChemBFN
Atomistic DescriptionBBBPROC-AUC95.74ChemBFN
Atomistic DescriptionHIV datasetAUC0.794ChemBFN
Atomistic DescriptionBACEROC-AUC73.56ChemBFN
Atomistic DescriptionESOLRMSE0.884ChemBFN

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