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Papers/G-CASCADE: Efficient Cascaded Graph Convolutional Decoding...

G-CASCADE: Efficient Cascaded Graph Convolutional Decoding for 2D Medical Image Segmentation

Md Mostafijur Rahman, Radu Marculescu

2023-10-24Retinal Vessel SegmentationSegmentationSemantic SegmentationMedical Image SegmentationImage Segmentation
PaperPDFCode(official)

Abstract

In recent years, medical image segmentation has become an important application in the field of computer-aided diagnosis. In this paper, we are the first to propose a new graph convolution-based decoder namely, Cascaded Graph Convolutional Attention Decoder (G-CASCADE), for 2D medical image segmentation. G-CASCADE progressively refines multi-stage feature maps generated by hierarchical transformer encoders with an efficient graph convolution block. The encoder utilizes the self-attention mechanism to capture long-range dependencies, while the decoder refines the feature maps preserving long-range information due to the global receptive fields of the graph convolution block. Rigorous evaluations of our decoder with multiple transformer encoders on five medical image segmentation tasks (i.e., Abdomen organs, Cardiac organs, Polyp lesions, Skin lesions, and Retinal vessels) show that our model outperforms other state-of-the-art (SOTA) methods. We also demonstrate that our decoder achieves better DICE scores than the SOTA CASCADE decoder with 80.8% fewer parameters and 82.3% fewer FLOPs. Our decoder can easily be used with other hierarchical encoders for general-purpose semantic and medical image segmentation tasks.

Results

TaskDatasetMetricValueModel
Medical Image SegmentationKvasir-SEGmIoU0.879PVT-GCASCADE
Medical Image SegmentationKvasir-SEGmean Dice0.9274PVT-GCASCADE
Medical Image SegmentationISIC 2018 DSC91.51PVT-GCASCADE
Medical Image SegmentationISIC 2018 mIoU86.53PVT-GCASCADE
Medical Image SegmentationCVC-ColonDBmIoU0.746PVT-GCASCADE
Medical Image SegmentationCVC-ColonDBmean Dice0.8261PVT-GCASCADE
Medical Image SegmentationMICCAI 2015 Multi-Atlas Abdomen Labeling ChallengeAvg DSC84.54MERIT-GCASCADE
Medical Image SegmentationMICCAI 2015 Multi-Atlas Abdomen Labeling ChallengeAvg HD10.38MERIT-GCASCADE
Medical Image SegmentationMICCAI 2015 Multi-Atlas Abdomen Labeling ChallengeAvg DSC83.28PVT-GCASCADE
Medical Image SegmentationMICCAI 2015 Multi-Atlas Abdomen Labeling ChallengeAvg HD15.83PVT-GCASCADE
Medical Image SegmentationAutomatic Cardiac Diagnosis Challenge (ACDC)Avg DSC92.23MERIT-GCASCADE
Medical Image SegmentationAutomatic Cardiac Diagnosis Challenge (ACDC)Avg DSC91.95PVT-GCASCADE
Medical Image SegmentationCVC-ClinicDBmIoU0.9018PVT-GCASCADE
Medical Image SegmentationCVC-ClinicDBmean Dice0.9468PVT-GCASCADE
Medical Image SegmentationCHASE_DB1DSC0.8267MERIT-GCASCADE
Medical Image SegmentationCHASE_DB1DSC0.8251PVT-GCASCADE
Medical Image SegmentationDRIVEF1 score0.829MERIT-GCASCADE
Medical Image SegmentationDRIVERecall0.8281MERIT-GCASCADE
Medical Image SegmentationDRIVESpecificity0.9844MERIT-GCASCADE
Medical Image SegmentationDRIVEmIoU0.7081MERIT-GCASCADE
Medical Image SegmentationDRIVEF1 score0.821PVT-GCASCADE
Medical Image SegmentationDRIVERecall0.83PVT-GCASCADE
Medical Image SegmentationDRIVESpecificity0.9822PVT-GCASCADE
Medical Image SegmentationDRIVEmIoU0.697PVT-GCASCADE
Medical Image SegmentationCHASE_DB1F1 score0.8267MERIT-GCASCADE
Medical Image SegmentationCHASE_DB1Sensitivity0.8493MERIT-GCASCADE
Medical Image SegmentationCHASE_DB1mIOU0.705MERIT-GCASCADE
Medical Image SegmentationCHASE_DB1F1 score0.8251PVT-GCASCADE
Medical Image SegmentationCHASE_DB1Sensitivity0.8584PVT-GCASCADE
Medical Image SegmentationCHASE_DB1mIOU0.7024PVT-GCASCADE
Medical Image SegmentationDRIVEAccuracy0.9707MERIT-GCASCADE
Medical Image SegmentationDRIVEF1 score0.829MERIT-GCASCADE
Medical Image SegmentationDRIVESpecificity0.9844MERIT-GCASCADE
Medical Image SegmentationDRIVEmIoU0.7081MERIT-GCASCADE
Medical Image SegmentationDRIVEsensitivity0.8281MERIT-GCASCADE
Medical Image SegmentationDRIVEAccuracy0.9689PVT-GCASCADE
Medical Image SegmentationDRIVEF1 score0.821PVT-GCASCADE
Medical Image SegmentationDRIVESpecificity0.9822PVT-GCASCADE
Medical Image SegmentationDRIVEmIoU0.697PVT-GCASCADE
Medical Image SegmentationDRIVEsensitivity0.83PVT-GCASCADE
Retinal Vessel SegmentationCHASE_DB1F1 score0.8267MERIT-GCASCADE
Retinal Vessel SegmentationCHASE_DB1Sensitivity0.8493MERIT-GCASCADE
Retinal Vessel SegmentationCHASE_DB1mIOU0.705MERIT-GCASCADE
Retinal Vessel SegmentationCHASE_DB1F1 score0.8251PVT-GCASCADE
Retinal Vessel SegmentationCHASE_DB1Sensitivity0.8584PVT-GCASCADE
Retinal Vessel SegmentationCHASE_DB1mIOU0.7024PVT-GCASCADE
Retinal Vessel SegmentationDRIVEAccuracy0.9707MERIT-GCASCADE
Retinal Vessel SegmentationDRIVEF1 score0.829MERIT-GCASCADE
Retinal Vessel SegmentationDRIVESpecificity0.9844MERIT-GCASCADE
Retinal Vessel SegmentationDRIVEmIoU0.7081MERIT-GCASCADE
Retinal Vessel SegmentationDRIVEsensitivity0.8281MERIT-GCASCADE
Retinal Vessel SegmentationDRIVEAccuracy0.9689PVT-GCASCADE
Retinal Vessel SegmentationDRIVEF1 score0.821PVT-GCASCADE
Retinal Vessel SegmentationDRIVESpecificity0.9822PVT-GCASCADE
Retinal Vessel SegmentationDRIVEmIoU0.697PVT-GCASCADE
Retinal Vessel SegmentationDRIVEsensitivity0.83PVT-GCASCADE

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