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Papers/Span-based Joint Entity and Relation Extraction with Trans...

Span-based Joint Entity and Relation Extraction with Transformer Pre-training

Markus Eberts, Adrian Ulges

2019-09-17Relation ExtractionJoint Entity and Relation ExtractionRelation ClassificationNamed Entity Recognition (NER)
PaperPDFCodeCode(official)Code

Abstract

We introduce SpERT, an attention model for span-based joint entity and relation extraction. Our key contribution is a light-weight reasoning on BERT embeddings, which features entity recognition and filtering, as well as relation classification with a localized, marker-free context representation. The model is trained using strong within-sentence negative samples, which are efficiently extracted in a single BERT pass. These aspects facilitate a search over all spans in the sentence. In ablation studies, we demonstrate the benefits of pre-training, strong negative sampling and localized context. Our model outperforms prior work by up to 2.6% F1 score on several datasets for joint entity and relation extraction.

Results

TaskDatasetMetricValueModel
Relation ExtractionAdverse Drug Events (ADE) CorpusNER Macro F189.25SpERT (without overlap)
Relation ExtractionAdverse Drug Events (ADE) CorpusRE+ Macro F179.24SpERT (without overlap)
Relation ExtractionAdverse Drug Events (ADE) CorpusNER Macro F189.28SpERT (with overlap)
Relation ExtractionAdverse Drug Events (ADE) CorpusRE+ Macro F178.84SpERT (with overlap)
Relation ExtractionCoNLL04NER Macro F186.25SpERT
Relation ExtractionCoNLL04NER Micro F188.94SpERT
Relation ExtractionCoNLL04RE+ Macro F1 72.87SpERT
Relation ExtractionCoNLL04RE+ Micro F171.47SpERT
Relation ExtractionSciERCEntity F170.3SpERT (with overlap)
Relation ExtractionSciERCRelation F150.84SpERT (with overlap)
Relation ExtractionSciERCEntity F170.33SpERT
Information ExtractionSciERCEntity F170.3SpERT (with overlap)
Information ExtractionSciERCRelation F150.84SpERT (with overlap)
Information ExtractionSciERCEntity F170.33SpERT
Named Entity Recognition (NER)SciERCF170.33SpERT

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