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Models/BioT5+

BioT5+

Reported on 35 benchmarks across 6 tasks · 1 paper · 25 SOTA

Note: results are matched by exact model name. Different papers may use the same name for different model variants.

Medical35 results

  • Drug DiscoveryonChEBI-20
    BLEU· 2024-02-27
    87.2
    best: 92.6 (LDMol)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Drug DiscoveryonChEBI-20
    Exact Match· 2024-02-27
    52.2
    best: 53.3 (LDMol)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Drug DiscoveryonChEBI-20
    MACCS FTS· 2024-02-27
    90.7
    best: 97.3 (LDMol)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Drug DiscoveryonChEBI-20
    Morgan FTS· 2024-02-27
    77.9
    best: 93.1 (LDMol)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Drug DiscoveryonChEBI-20
    RDK FTS· 2024-02-27
    83.5
    best: 95 (LDMol)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Molecule CaptioningonChEBI-20
    BLEU-2· 2024-02-27
    66.6
    best: 73.2 (Mol-LLM (Mistral-Instruct-v0.2))
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Molecule CaptioningonChEBI-20
    BLEU-4· 2024-02-27
    59.1
    best: 60.8 (MolReFlect)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Molecule CaptioningonChEBI-20
    METEOR· 2024-02-27
    68.1
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Molecule CaptioningonChEBI-20
    ROUGE-1· 2024-02-27
    71
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Molecule CaptioningonChEBI-20
    ROUGE-2· 2024-02-27
    58.4
    best: 61.8 (XMolCap)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Molecule CaptioningonChEBI-20
    ROUGE-L· 2024-02-27
    65
    best: 65.3 (PEIT-GEN)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Forward reaction predictiononMol-Instruction
    Exact· 2024-02-27
    0.864
    best: 0.945 (SLM4CRP)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Forward reaction predictiononMol-Instruction
    Morgan FTS· 2024-02-27
    0.935
    best: 0.986 (SLM4CRP)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Forward reaction predictiononMol-Instruction
    Validity· 2024-02-27
    1
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Reagent PredictiononMol-Instruction
    Exact· 2024-02-27
    0.257
    best: 0.284 (SLM4CRP)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Reagent PredictiononMol-Instruction
    Morgan FTS· 2024-02-27
    0.512
    best: 0.649 (SLM4CRP)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Reagent PredictiononMol-Instruction
    Validity· 2024-02-27
    1
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • RetrosynthesisonMol-Instruction
    Exact· 2024-02-27
    0.642
    best: 0.757 (SLM4CRP)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • RetrosynthesisonMol-Instruction
    Morgan FTS· 2024-02-27
    0.866
    best: 0.905 (SLM4CRP)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • RetrosynthesisonMol-Instruction
    Validity· 2024-02-27
    1
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Text-based de novo Molecule GenerationonChEBI-20
    BLEU· 2024-02-27
    87.2
    best: 92.6 (LDMol)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Text-based de novo Molecule GenerationonChEBI-20
    Exact Match· 2024-02-27
    52.2
    best: 53.3 (LDMol)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Text-based de novo Molecule GenerationonChEBI-20
    MACCS FTS· 2024-02-27
    90.7
    best: 97.3 (LDMol)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Text-based de novo Molecule GenerationonChEBI-20
    Morgan FTS· 2024-02-27
    77.9
    best: 93.1 (LDMol)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Text-based de novo Molecule GenerationonChEBI-20
    RDK FTS· 2024-02-27
    83.5
    best: 95 (LDMol)
    SOTA
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Drug DiscoveryonChEBI-20
    Frechet ChemNet Distance (FCD)· 2024-02-27
    0.353
    best: 2.49 (MolT5-small)
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Drug DiscoveryonChEBI-20
    Levenshtein· 2024-02-27
    12.776
    best: 28.54 (Text+Chem T5 small)
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Drug DiscoveryonChEBI-20
    Parameter Count· 2024-02-27
    252000000
    best: 770000000 (MolT5-Large)
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Drug DiscoveryonChEBI-20
    Text2Mol· 2024-02-27
    57.9
    best: 59.3 (MolReGPT (GPT-4-0413))
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Drug DiscoveryonChEBI-20
    Validity· 2024-02-27
    100
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Text-based de novo Molecule GenerationonChEBI-20
    Frechet ChemNet Distance (FCD)· 2024-02-27
    0.353
    best: 2.49 (MolT5-small)
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Text-based de novo Molecule GenerationonChEBI-20
    Levenshtein· 2024-02-27
    12.776
    best: 28.54 (Text+Chem T5 small)
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Text-based de novo Molecule GenerationonChEBI-20
    Parameter Count· 2024-02-27
    252000000
    best: 770000000 (MolT5-Large)
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Text-based de novo Molecule GenerationonChEBI-20
    Text2Mol· 2024-02-27
    57.9
    best: 59.3 (MolReGPT (GPT-4-0413))
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810
  • Text-based de novo Molecule GenerationonChEBI-20
    Validity· 2024-02-27
    100
    BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task TuningarXiv:2402.17810