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Models/BioLinkBERT (base)

BioLinkBERT (base)

Reported on 10 benchmarks across 7 tasks · 1 paper · 1 SOTA

Note: results are matched by exact model name. Different papers may use the same name for different model variants.

Natural Language Processing6 results

  • Question AnsweringonMedQA
    Accuracy· 2022-03-29
    40
    best: 91.1 (Med-Gemini)
    SOTA
    LinkBERT: Pretraining Language Models with Document LinksarXiv:2203.15827
  • Question AnsweringonBLURB
    Accuracy· 2022-03-29
    80.81
    best: 83.5 (BioLinkBERT (large))
    LinkBERT: Pretraining Language Models with Document LinksarXiv:2203.15827
  • Question AnsweringonPubMedQA
    Accuracy· 2022-03-29
    70.2
    best: 81.6 (Meditron-70B (CoT + SC))
    LinkBERT: Pretraining Language Models with Document LinksarXiv:2203.15827
  • Question AnsweringonBioASQ
    Accuracy· 2022-03-29
    91.4
    best: 94.8 (BioLinkBERT (large))
    LinkBERT: Pretraining Language Models with Document LinksarXiv:2203.15827
  • Text ClassificationonBLURB
    F1· 2022-03-29
    84.35
    best: 84.88 (BioLinkBERT (large))
    LinkBERT: Pretraining Language Models with Document LinksarXiv:2203.15827
  • Sentence Pair ModelingonBIOSSES
    Pearson Correlation· 2022-03-29
    0.9325
    best: 0.9363 (BioLinkBERT (large))
    LinkBERT: Pretraining Language Models with Document LinksarXiv:2203.15827

Medical2 results

  • Language ModellingonBIOSSES
    Pearson Correlation· 2022-03-29
    0.9325
    best: 0.9363 (BioLinkBERT (large))
    LinkBERT: Pretraining Language Models with Document LinksarXiv:2203.15827
  • Biomedical Information RetrievalonEBM PICO
    Macro F1 word level· 2022-03-29
    73.97
    best: 74.19 (BioLinkBERT (large))
    LinkBERT: Pretraining Language Models with Document LinksarXiv:2203.15827

Methodology2 results

  • ClassificationonBLURB
    F1· 2022-03-29
    84.35
    best: 84.88 (BioLinkBERT (large))
    LinkBERT: Pretraining Language Models with Document LinksarXiv:2203.15827
  • Semantic SimilarityonBIOSSES
    Pearson Correlation· 2022-03-29
    0.9325
    best: 0.9363 (BioLinkBERT (large))
    LinkBERT: Pretraining Language Models with Document LinksarXiv:2203.15827