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Models/BERT-Base cased (fine-tuned on "Annotated corpus for semantic similarity of clinical trial outcomes, original corpus")

BERT-Base cased (fine-tuned on "Annotated corpus for semantic similarity of clinical trial outcomes, original corpus")

Reported on 9 benchmarks across 3 tasks

Note: results are matched by exact model name. Different papers may use the same name for different model variants.

Medical3 results

  • Language ModellingonAnnotated corpus for semantic similarity of clinical trial outcomes (original corpus)
    F1
    84.21
    best: 89.75 (BioBERT (pre-trained on PubMed abstracts + PMC, fine-tuned on "Annotated corpus for semantic similarity of clinical trial outcomes, original corpus"))
  • Language ModellingonAnnotated corpus for semantic similarity of clinical trial outcomes (original corpus)
    Precision
    83.36
    best: 88.93 (BioBERT (pre-trained on PubMed abstracts + PMC, fine-tuned on "Annotated corpus for semantic similarity of clinical trial outcomes, original corpus"))
  • Language ModellingonAnnotated corpus for semantic similarity of clinical trial outcomes (original corpus)
    Recall
    85.2
    best: 91.53 (SciBERT cased (SciVocab, fine-tuned on "Annotated corpus for semantic similarity of clinical trial outcomes, original corpus"))

Natural Language Processing3 results

  • Sentence Pair ModelingonAnnotated corpus for semantic similarity of clinical trial outcomes (original corpus)
    F1
    84.21
    best: 89.75 (BioBERT (pre-trained on PubMed abstracts + PMC, fine-tuned on "Annotated corpus for semantic similarity of clinical trial outcomes, original corpus"))
  • Sentence Pair ModelingonAnnotated corpus for semantic similarity of clinical trial outcomes (original corpus)
    Precision
    83.36
    best: 88.93 (BioBERT (pre-trained on PubMed abstracts + PMC, fine-tuned on "Annotated corpus for semantic similarity of clinical trial outcomes, original corpus"))
  • Sentence Pair ModelingonAnnotated corpus for semantic similarity of clinical trial outcomes (original corpus)
    Recall
    85.2
    best: 91.53 (SciBERT cased (SciVocab, fine-tuned on "Annotated corpus for semantic similarity of clinical trial outcomes, original corpus"))

Methodology3 results

  • Semantic SimilarityonAnnotated corpus for semantic similarity of clinical trial outcomes (original corpus)
    F1
    84.21
    best: 89.75 (BioBERT (pre-trained on PubMed abstracts + PMC, fine-tuned on "Annotated corpus for semantic similarity of clinical trial outcomes, original corpus"))
  • Semantic SimilarityonAnnotated corpus for semantic similarity of clinical trial outcomes (original corpus)
    Precision
    83.36
    best: 88.93 (BioBERT (pre-trained on PubMed abstracts + PMC, fine-tuned on "Annotated corpus for semantic similarity of clinical trial outcomes, original corpus"))
  • Semantic SimilarityonAnnotated corpus for semantic similarity of clinical trial outcomes (original corpus)
    Recall
    85.2
    best: 91.53 (SciBERT cased (SciVocab, fine-tuned on "Annotated corpus for semantic similarity of clinical trial outcomes, original corpus"))