39 machine learning datasets
39 dataset results
EPISURG is a clinical dataset of $T_1$-weighted magnetic resonance images (MRI) from 430 epileptic patients who underwent resective brain surgery at the National Hospital of Neurology and Neurosurgery (Queen Square, London, United Kingdom) between 1990 and 2018.
This mouse cerebellar atlas can be used for mouse cerebellar morphometry.
This collection includes datasets from 20 subjects with primary newly diagnosed glioblastoma who were treated with surgery and standard concomitant chemo-radiation therapy (CRT) followed by adjuvant chemotherapy. Two MRI exams are included for each patient: within 90 days following CRT completion and at progression (determined clinically, and based on a combination of clinical performance and/or imaging findings, and punctuated by a change in treatment or intervention). All image sets are in DICOM format and contain T1w (pre and post-contrast agent), FLAIR, T2w, ADC, normalized cerebral blood flow, normalized relative cerebral blood volume, standardized relative cerebral blood volume, and binary tumor masks (generated using T1w images). The perfusion images were generated from dynamic susceptibility contrast (GRE-EPI DSC) imaging following a preload of contrast agent. All of the series are co-registered with the T1+C images. The intent of this dataset is for assessing deep learnin
Ultra-high field MRI enables sub-millimetre resolution imaging of human brain, allowing to disentangle complex functional circuits across different cortical depths. Segmentation, meant as the partition of MR brain images in multiple anatomical classes, is an essential step in many functional and structural neuroimaging studies. In this work, we design and test CEREBRUM-7T, an optimised end-to-end CNN architecture, that allows to segment a whole 7T T1w MRI brain volume at once, without the need of partitioning it into 2D or 3D tiles. Despite deep learning (DL) methods are recently starting to emerge in 3T literature, to the best of our knowledge, CEREBRUM-7T is the first example of DL architecture directly applied on 7T data. Training is performed in a weakly supervised fashion, since it exploits a ground-truth (GT) with errors. The generated model is able to produce accurate multi-structure segmentation masks on six different classes, in only few seconds. In the experimental part, we s
SR-Reg is a brain MR-CT registration dataset, deriving from SynthRAD 2023 (https://synthrad2023.grand-challenge.org/). This dataset contains 180 subjects preprocessed images, and each subject comprises a brain MR image and a brain CT image with corresponding segmentation label. SR-Reg is first introduced in MambaMorph (https://arxiv.org/abs/2401.13934).
This collection comprises multi-parametric magnetic resonance imaging (mpMRI) scans for de novo Glioblastoma (GBM) patients from the University of Pennsylvania Health System, coupled with patient demographics, clinical outcome (e.g., overall survival, genomic information, tumor progression), as well as computer-aided and manually-corrected segmentation labels of multiple histologically distinct tumor sub-regions, computer-aided and manually-corrected segmentations of the whole brain, a rich panel of radiomic features along with their corresponding co-registered mpMRI volumes in NIfTI format. Scans were initially skull-stripped and co-registered, before their tumor segmentation labels were produced by an automated computational method. These segmentation labels were revised and any label misclassifications were manually corrected/approved by expert board-certified neuroradiologists. The final labels were used to extract a rich panel of imaging features, including intensity, volumetric,
Mouse Brain MRI atlas (both in-vivo and ex-vivo) (repository relocated from the original webpage)
Several datasets are fostering innovation in higher-level functions for everyone, everywhere. By providing this repository, we hope to encourage the research community to focus on hard problems. In this repository, we present our medical imaging DICOM files of patients from our User Tests and Analysis 4 (UTA4) study. Here, we provide a dataset of the used medical images during the UTA4 tasks. This repository and respective dataset should be paired with the dataset-uta4-rates repository dataset. Work and results are published on a top Human-Computer Interaction (HCI) conference named AVI 2020 (page). Results were analyzed and interpreted on our Statistical Analysis charts. The user tests were made in clinical institutions, where clinicians diagnose several patients for a Single-Modality vs Multi-Modality comparison. For example, in these tests, we used both prototype-single-modality and prototype-multi-modality repositories for the comparison. On the same hand, the hereby dataset repres
The Cambridge Centre for Ageing and Neuroscience (Cam-CAN) is a large-scale collaborative research project at the University of Cambridge, launched in October 2010, with substantial initial funding from the Biotechnology and Biological Sciences Research Council (BBSRC), followed by support from the Medical Research Council (MRC) Cognition & Brain Sciences Unit (CBU) and the European Union Horizon 2020 LifeBrain project. The Cam-CAN project uses epidemiological, cognitive, and neuroimaging data to understand how individuals can best retain cognitive abilities into old age.
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The Algonauts 2023 Challenge focuses on predicting responses in the human brain as participants perceive complex natural visual scenes. Through collaboration with the Natural Scenes Dataset (NSD) team, the Challenge runs on the largest suitable brain dataset available, opening new venues for data-hungry modeling.
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The dHCP dataset contains neonatal MRI.
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Datasets at https://zenodo.org/record/8105485 for Motion Robust CMR Reconstruction Code in https://github.com/syedmurtazaarshad/motion-robust-CMR