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Datasets/Pubmed

Pubmed

GraphsUnknownIntroduced 2008-01-01

The PubMed dataset consists of 19717 scientific publications from PubMed database pertaining to diabetes classified into one of three classes. The citation network consists of 44338 links. Each publication in the dataset is described by a TF/IDF weighted word vector from a dictionary which consists of 500 unique words.

Source: https://linqs.soe.ucsc.edu/data

Benchmarks

Classification/Test Accuracy Community Detection/ACC Community Detection/NMI Graph Classification/Test Accuracy Graph Clustering/ACC Graph Clustering/NMI Graph Clustering/ARI Graph Clustering/F score Link Prediction/AUC Link Prediction/AP Link Prediction/Accuracy Link Prediction/ACC Node Classification/Accuracy Node Classification/Training Split Node Classification/F1 Node Classification/Validation Node Classification/Accuracy (%)Node Classification/F1-Score Node Classification/Inference Time (ms)Node Classification/NMI Summarization/ROUGE-1 Summarization/ROUGE-2 Summarization/ROUGE-L Text Summarization/ROUGE-1 Text Summarization/ROUGE-2 Text Summarization/ROUGE-L

Related Benchmarks

PubMed (0.03%)/Node Classification/Accuracy PubMed (0.05%)/Node Classification/Accuracy PubMed (0.1%)/Node Classification/Accuracy PubMed (48%/32%/20% fixed splits)/Node Classification/1:1 Accuracy PubMed (48%/32%/20% fixed splits)/Node Classification/Accuracy PubMed (60%/20%/20% random splits)/Node Classification/1:1 Accuracy PubMed 20k RCT/Classification/F1 PubMed 20k RCT/Sentence Classification/F1 PubMed 20k RCT/Text Classification/F1 PubMed Cognitive Control Abstracts/Language Modelling/BPB PubMed with Public Split: fixed 20 nodes per class/Node Classification/Accuracy PubMed: 5 nodes per class/Node Classification/Accuracy PubMedQA/Few-Shot Learning/Accuracy PubMedQA/Meta-Learning/Accuracy PubMedQA/Question Answering/Accuracy PubMedQA/Retrieval/Accuracy (Top-1)PubMedQA corpus with metadata/Inductive knowledge graph completion/ANS-EM PubMedQA corpus with metadata/Knowledge Graph Completion/ANS-EM PubMedQA corpus with metadata/Knowledge Graphs/ANS-EM PubMedQA corpus with metadata/Large Language Model/ANS-EM PubMedQA corpus with metadata/Retrieval/Accuracy (Top-1)Pubmed (biased evaluation)/Link Prediction/AP Pubmed (biased evaluation)/Link Prediction/AUC Pubmed (biased evaluation)/Link Prediction/Accuracy Pubmed (nonstandard variant)/Link Prediction/AP Pubmed (nonstandard variant)/Link Prediction/AUC Pubmed Full-supervised/Node Classification/Accuracy Pubmed random partition/Node Classification/Accuracy Pubmed: fixed 20 node per class/Node Classification/Accuracy

Statistics

Papers: 1,236
Benchmarks: 26

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Tasks

Classification Community Detection Extended Summarization Graph Classification Graph Clustering Language Modelling Link Prediction Node Classification Node Classification on Non-Homophilic (Heterophilic) Graphs Node Clustering Sentence Classification Summarization Text Summarization Unsupervised Extractive Summarization