Clinical Concept Extraction on 2010 i2b2/VA

Metric: Exact Span F1 (higher is better)

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#	Model↕	Exact Span F1▼	Extra Data	Paper	Date↕	Code
1	BERTlarge (MIMIC)	90.25	No	Enhancing Clinical Concept Extraction with Conte...	2019-02-22	-
2	CharacterBERT (base, medical)	89.24	No	CharacterBERT: Reconciling ELMo and BERT for Wor...	2020-10-20	Code
3	ClinicalBERT	87.4	No	Cost-effective Selection of Pretraining Data: A ...	2020-10-02	-
4	ELMo (finetuned on i2b2) + word2vec (i2b2)	86.23	No	-	-	Code
5	deBruijn et al. (System 1.1)	85.23	No	-	-	-

#1BERTlarge (MIMIC)SOTA
90.25
Exact Span F1· 2019-02-22
Enhancing Clinical Concept Extraction with Contextual Embeddings
#2CharacterBERT (base, medical)
89.24
Exact Span F1· 2020-10-20
CharacterBERT: Reconciling ELMo and BERT for Word-Level Open-Vocabulary Representations From Characters Code
#3ClinicalBERT
87.4
Exact Span F1· 2020-10-02
Cost-effective Selection of Pretraining Data: A Case Study of Pretraining BERT on Social Media
#4ELMo (finetuned on i2b2) + word2vec (i2b2)
86.23
Exact Span F1
No paperCode
#5deBruijn et al. (System 1.1)
85.23
Exact Span F1
No paper