Metric: AP (higher is better)
| # | Model↕ | AP▼ | Extra Data | Paper | Date↕ | Code |
|---|---|---|---|---|---|---|
| 1 | ESA + RWSE (Edge set attention, Random Walk Structural Encoding, + validation set) | 0.7479 | Yes | An end-to-end attention-based approach for learn... | 2024-02-16 | Code |
| 2 | ECFP + LightGBM | 0.746 | No | Molecular Fingerprints Are Strong Models for Pep... | 2025-01-29 | Code |
| 3 | TT + LightGBM | 0.7318 | No | Molecular Fingerprints Are Strong Models for Pep... | 2025-01-29 | Code |
| 4 | RDKit + LightGBM | 0.7311 | No | Molecular Fingerprints Are Strong Models for Pep... | 2025-01-29 | Code |
| 5 | CKGCN | 0.6952 | No | CKGConv: General Graph Convolution with Continuo... | 2024-04-21 | Code |
| 6 | TIGT | 0.6679 | No | Topology-Informed Graph Transformer | 2024-02-03 | Code |
| 7 | ViT-PS | 0.6575 | Yes | Learning Probabilistic Symmetrization for Archit... | 2023-06-05 | Code |
| 8 | EIGENFORMER | 0.6414 | No | Graph Transformers without Positional Encodings | 2024-01-31 | - |