Named Entity Recognition (NER) on JNLPBA

Metric: F1 (higher is better)

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#	Model↕	F1▼	Extra Data	Paper	Date↕	Code
1	KeBioLM	82	No	Improving Biomedical Pretrained Language Models ...	2021-04-21	Code
2	BLSTM-CNN-Char (SparkNLP)	81.29	No	Biomedical Named Entity Recognition at Scale	2020-11-12	Code
3	Spark NLP	81.29	No	Biomedical Named Entity Recognition at Scale	2020-11-12	Code
4	BINDER	80.3	No	Optimizing Bi-Encoder for Named Entity Recogniti...	2022-08-30	Code
5	BioMobileBERT	80.13	No	On the Effectiveness of Compact Biomedical Trans...	2022-09-07	Code
6	BioLinkBERT (large)	80.06	No	LinkBERT: Pretraining Language Models with Docum...	2022-03-29	Code
7	DistilBioBERT	79.97	No	On the Effectiveness of Compact Biomedical Trans...	2022-09-07	Code
8	CompactBioBERT	79.88	No	On the Effectiveness of Compact Biomedical Trans...	2022-09-07	Code
9	PubMedBERT uncased	79.1	No	Domain-Specific Language Model Pretraining for B...	2020-07-31	Code
10	BioDistilBERT	79.1	No	On the Effectiveness of Compact Biomedical Trans...	2022-09-07	Code
11	BioKMNER + BioBERT	77.83	No	-	-	Code
12	aimped	77.72	No	-	-	-
13	BioBERT	77.59	No	BioBERT: a pre-trained biomedical language repre...	2019-01-25	Code
14	SciFive-Large	77.55	No	SciFive: a text-to-text transformer model for bi...	2021-05-28	Code
15	BioFLAIR	77.03	Yes	BioFLAIR: Pretrained Pooled Contextualized Embed...	2019-08-13	Code
16	MINER	77.03	No	MINER: Improving Out-of-Vocabulary Named Entity ...	2022-04-09	Code
17	SciBERT (Base Vocab)	75.77	Yes	SciBERT: A Pretrained Language Model for Scienti...	2019-03-26	Code

#1KeBioLMSOTA
82
F1· 2021-04-21
Improving Biomedical Pretrained Language Models with Knowledge Code
#2BLSTM-CNN-Char (SparkNLP)SOTA
81.29
F1· 2020-11-12
Biomedical Named Entity Recognition at Scale Code
#3Spark NLP
81.29
F1· 2020-11-12
Biomedical Named Entity Recognition at Scale Code
#4BINDER
80.3
F1· 2022-08-30
Optimizing Bi-Encoder for Named Entity Recognition via Contrastive Learning Code
#5BioMobileBERT
80.13
F1· 2022-09-07
On the Effectiveness of Compact Biomedical Transformers Code
#6BioLinkBERT (large)
80.06
F1· 2022-03-29
LinkBERT: Pretraining Language Models with Document Links Code
#7DistilBioBERT
79.97
F1· 2022-09-07
On the Effectiveness of Compact Biomedical Transformers Code
#8CompactBioBERT
79.88
F1· 2022-09-07
On the Effectiveness of Compact Biomedical Transformers Code
#9PubMedBERT uncasedSOTA
79.1
F1· 2020-07-31
Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing Code
#10BioDistilBERT
79.1
F1· 2022-09-07
On the Effectiveness of Compact Biomedical Transformers Code
#11BioKMNER + BioBERT
77.83
F1
No paperCode
#12aimped
77.72
F1
No paper
#13BioBERTSOTA
77.59
F1· 2019-01-25
BioBERT: a pre-trained biomedical language representation model for biomedical text mining Code
#14SciFive-Large
77.55
F1· 2021-05-28
SciFive: a text-to-text transformer model for biomedical literature Code
#15BioFLAIR
77.03
F1· Extra Data· 2019-08-13
BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks Code
#16MINER
77.03
F1· 2022-04-09
MINER: Improving Out-of-Vocabulary Named Entity Recognition from an Information Theoretic Perspective Code
#17SciBERT (Base Vocab)
75.77
F1· Extra Data· 2019-03-26
SciBERT: A Pretrained Language Model for Scientific Text Code