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Natural Language Processing
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Named Entity Recognition (NER)
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JNLPBA
Named Entity Recognition (NER) on JNLPBA
Metric: F1 (higher is better)
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Model
↕
F1
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Extra Data
Paper
Date
↕
Code
1
KeBioLM
82
No
Improving Biomedical Pretrained Language Models ...
2021-04-21
Code
2
BLSTM-CNN-Char (SparkNLP)
81.29
No
Biomedical Named Entity Recognition at Scale
2020-11-12
Code
3
Spark NLP
81.29
No
Biomedical Named Entity Recognition at Scale
2020-11-12
Code
4
BINDER
80.3
No
Optimizing Bi-Encoder for Named Entity Recogniti...
2022-08-30
Code
5
BioMobileBERT
80.13
No
On the Effectiveness of Compact Biomedical Trans...
2022-09-07
Code
6
BioLinkBERT (large)
80.06
No
LinkBERT: Pretraining Language Models with Docum...
2022-03-29
Code
7
DistilBioBERT
79.97
No
On the Effectiveness of Compact Biomedical Trans...
2022-09-07
Code
8
CompactBioBERT
79.88
No
On the Effectiveness of Compact Biomedical Trans...
2022-09-07
Code
9
PubMedBERT uncased
79.1
No
Domain-Specific Language Model Pretraining for B...
2020-07-31
Code
10
BioDistilBERT
79.1
No
On the Effectiveness of Compact Biomedical Trans...
2022-09-07
Code
11
BioKMNER + BioBERT
77.83
No
-
-
Code
12
aimped
77.72
No
-
-
-
13
BioBERT
77.59
No
BioBERT: a pre-trained biomedical language repre...
2019-01-25
Code
14
SciFive-Large
77.55
No
SciFive: a text-to-text transformer model for bi...
2021-05-28
Code
15
BioFLAIR
77.03
Yes
BioFLAIR: Pretrained Pooled Contextualized Embed...
2019-08-13
Code
16
MINER
77.03
No
MINER: Improving Out-of-Vocabulary Named Entity ...
2022-04-09
Code
17
SciBERT (Base Vocab)
75.77
Yes
SciBERT: A Pretrained Language Model for Scienti...
2019-03-26
Code