Named Entity Recognition (NER) on BC2GM

Metric: F1 (higher is better)

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#	Model↕	F1▼	Extra Data	Paper	Date↕	Code
1	Spark NLP	88.75	No	Biomedical Named Entity Recognition at Scale	2020-11-12	Code
2	BioDistilBERT	86.97	No	On the Effectiveness of Compact Biomedical Trans...	2022-09-07	Code
3	CompactBioBERT	86.71	No	On the Effectiveness of Compact Biomedical Trans...	2022-09-07	Code
4	DistilBioBERT	86.6	No	On the Effectiveness of Compact Biomedical Trans...	2022-09-07	Code
5	HGN	85.65	No	Hero-Gang Neural Model For Named Entity Recognit...	2022-05-15	Code
6	BioKMNER + BioBERT	85.29	No	-	-	Code
7	BioMobileBERT	85.26	No	On the Effectiveness of Compact Biomedical Trans...	2022-09-07	Code
8	BioLinkBERT (large)	85.18	No	LinkBERT: Pretraining Language Models with Docum...	2022-03-29	Code
9	KeBioLM	85.1	No	Improving Biomedical Pretrained Language Models ...	2021-04-21	Code
10	PubMedBERT uncased	84.52	No	Domain-Specific Language Model Pretraining for B...	2020-07-31	Code
11	BERN2	83.7	No	BERN2: an advanced neural biomedical named entit...	2022-01-06	Code
12	BERN	83.4	No	-	-	Code
13	UniNER-7B	82.42	No	UniversalNER: Targeted Distillation from Large L...	2023-08-07	Code

#1Spark NLPSOTA
88.75
F1· 2020-11-12
Biomedical Named Entity Recognition at Scale Code
#2BioDistilBERT
86.97
F1· 2022-09-07
On the Effectiveness of Compact Biomedical Transformers Code
#3CompactBioBERT
86.71
F1· 2022-09-07
On the Effectiveness of Compact Biomedical Transformers Code
#4DistilBioBERT
86.6
F1· 2022-09-07
On the Effectiveness of Compact Biomedical Transformers Code
#5HGN
85.65
F1· 2022-05-15
Hero-Gang Neural Model For Named Entity Recognition Code
#6BioKMNER + BioBERT
85.29
F1
No paperCode
#7BioMobileBERT
85.26
F1· 2022-09-07
On the Effectiveness of Compact Biomedical Transformers Code
#8BioLinkBERT (large)
85.18
F1· 2022-03-29
LinkBERT: Pretraining Language Models with Document Links Code
#9KeBioLM
85.1
F1· 2021-04-21
Improving Biomedical Pretrained Language Models with Knowledge Code
#10PubMedBERT uncasedSOTA
84.52
F1· 2020-07-31
Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing Code
#11BERN2
83.7
F1· 2022-01-06
BERN2: an advanced neural biomedical named entity recognition and normalization tool Code
#12BERN
83.4
F1
No paperCode
#13UniNER-7B
82.42
F1· 2023-08-07
UniversalNER: Targeted Distillation from Large Language Models for Open Named Entity Recognition Code