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Natural Language Processing
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Named Entity Recognition (NER)
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BC5CDR-chemical
Named Entity Recognition (NER) on BC5CDR-chemical
Metric: F1 (higher is better)
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#
Model
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F1
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Extra Data
Paper
Date
↕
Code
1
Spark NLP
94.88
No
Biomedical Named Entity Recognition at Scale
2020-11-12
Code
2
SciFive-Large
94.76
No
SciFive: a text-to-text transformer model for bi...
2021-05-28
Code
3
HGN
94.59
No
Hero-Gang Neural Model For Named Entity Recognit...
2022-05-15
Code
4
DistilBioBERT
94.53
No
On the Effectiveness of Compact Biomedical Trans...
2022-09-07
Code
5
BioDistilBERT
94.48
No
On the Effectiveness of Compact Biomedical Trans...
2022-09-07
Code
6
CompactBioBERT
94.31
No
On the Effectiveness of Compact Biomedical Trans...
2022-09-07
Code
7
BioMobileBERT
94.23
No
On the Effectiveness of Compact Biomedical Trans...
2022-09-07
Code
8
BioKMNER + BioBERT
94.22
No
-
-
Code
9
BioLinkBERT (large)
94.04
No
LinkBERT: Pretraining Language Models with Docum...
2022-03-29
Code
10
NCBI_BERT(base) (P)
93.5
No
Transfer Learning in Biomedical Natural Language...
2019-06-13
Code
11
KeBioLM
93.3
No
Improving Biomedical Pretrained Language Models ...
2021-04-21
Code
12
BioMegatron
92.9
No
BioMegatron: Larger Biomedical Domain Language M...
2020-10-12
Code
13
Att-BiLSTM-CRF
92.57
No
-
-
Code