Named Entity Recognition (NER) on BC5CDR-chemical

Metric: F1 (higher is better)

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#	Model↕	F1▼	Extra Data	Paper	Date↕	Code
1	Spark NLP	94.88	No	Biomedical Named Entity Recognition at Scale	2020-11-12	Code
2	SciFive-Large	94.76	No	SciFive: a text-to-text transformer model for bi...	2021-05-28	Code
3	HGN	94.59	No	Hero-Gang Neural Model For Named Entity Recognit...	2022-05-15	Code
4	DistilBioBERT	94.53	No	On the Effectiveness of Compact Biomedical Trans...	2022-09-07	Code
5	BioDistilBERT	94.48	No	On the Effectiveness of Compact Biomedical Trans...	2022-09-07	Code
6	CompactBioBERT	94.31	No	On the Effectiveness of Compact Biomedical Trans...	2022-09-07	Code
7	BioMobileBERT	94.23	No	On the Effectiveness of Compact Biomedical Trans...	2022-09-07	Code
8	BioKMNER + BioBERT	94.22	No	-	-	Code
9	BioLinkBERT (large)	94.04	No	LinkBERT: Pretraining Language Models with Docum...	2022-03-29	Code
10	NCBI_BERT(base) (P)	93.5	No	Transfer Learning in Biomedical Natural Language...	2019-06-13	Code
11	KeBioLM	93.3	No	Improving Biomedical Pretrained Language Models ...	2021-04-21	Code
12	BioMegatron	92.9	No	BioMegatron: Larger Biomedical Domain Language M...	2020-10-12	Code
13	Att-BiLSTM-CRF	92.57	No	-	-	Code

#1Spark NLPSOTA
94.88
F1· 2020-11-12
Biomedical Named Entity Recognition at Scale Code
#2SciFive-Large
94.76
F1· 2021-05-28
SciFive: a text-to-text transformer model for biomedical literature Code
#3HGN
94.59
F1· 2022-05-15
Hero-Gang Neural Model For Named Entity Recognition Code
#4DistilBioBERT
94.53
F1· 2022-09-07
On the Effectiveness of Compact Biomedical Transformers Code
#5BioDistilBERT
94.48
F1· 2022-09-07
On the Effectiveness of Compact Biomedical Transformers Code
#6CompactBioBERT
94.31
F1· 2022-09-07
On the Effectiveness of Compact Biomedical Transformers Code
#7BioMobileBERT
94.23
F1· 2022-09-07
On the Effectiveness of Compact Biomedical Transformers Code
#8BioKMNER + BioBERT
94.22
F1
No paperCode
#9BioLinkBERT (large)
94.04
F1· 2022-03-29
LinkBERT: Pretraining Language Models with Document Links Code
#10NCBI_BERT(base) (P)SOTA
93.5
F1· 2019-06-13
Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasets Code
#11KeBioLM
93.3
F1· 2021-04-21
Improving Biomedical Pretrained Language Models with Knowledge Code
#12BioMegatron
92.9
F1· 2020-10-12
BioMegatron: Larger Biomedical Domain Language Model Code
#13Att-BiLSTM-CRF
92.57
F1
No paperCode