Named Entity Recognition (NER) on NCBI-disease

Metric: F1 (higher is better)

LeaderboardDataset

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#	Model↕	F1▼	Extra Data	Paper	Date↕	Code
1	BioBERT	89.71	No	BioBERT: a pre-trained biomedical language repre...	2019-01-25	Code
2	SpanModel + SequenceLabelingModel	89.6	No	Comparing and combining some popular NER approac...	2023-05-30	Code
3	SciFive-Base	89.39	No	SciFive: a text-to-text transformer model for bi...	2021-05-28	Code
4	BLSTM-CNN-Char (SparkNLP)	89.13	No	Biomedical Named Entity Recognition at Scale	2020-11-12	Code
5	Spark NLP	89.13	No	Biomedical Named Entity Recognition at Scale	2020-11-12	Code
6	KeBioLM	89.1	No	Improving Biomedical Pretrained Language Models ...	2021-04-21	Code
7	CL-KL	88.96	No	Improving Named Entity Recognition by External C...	2021-05-08	Code
8	BioKMNER + BioBERT	88.77	No	-	-	Code
9	BioLinkBERT (large)	88.76	No	LinkBERT: Pretraining Language Models with Docum...	2022-03-29	Code
10	CompactBioBERT	88.67	No	On the Effectiveness of Compact Biomedical Trans...	2022-09-07	Code
11	STM	88.6	No	Learning A Unified Named Entity Tagger From Mult...	2019-09-25	Code
12	BERN2	88.6	No	BERN2: an advanced neural biomedical named entit...	2022-01-06	Code
13	BERN	88.3	No	-	-	Code
14	DistilBioBERT	87.93	No	On the Effectiveness of Compact Biomedical Trans...	2022-09-07	Code
15	RDANER	87.89	Yes	A Robust and Domain-Adaptive Approach for Low-Re...	2021-01-02	Code
16	PubMedBERT uncased	87.82	No	Domain-Specific Language Model Pretraining for B...	2020-07-31	Code
17	BioMegatron BERT-cased	87.8	No	BioMegatron: Larger Biomedical Domain Language M...	2020-10-12	Code
18	BioDistilBERT	87.61	No	On the Effectiveness of Compact Biomedical Trans...	2022-09-07	Code
19	ELECTRAMed	87.54	Yes	ELECTRAMed: a new pre-trained language represent...	2021-04-19	Code
20	BioMobileBERT	87.21	No	On the Effectiveness of Compact Biomedical Trans...	2022-09-07	Code
21	SciBERT (Base Vocab)	86.88	Yes	SciBERT: A Pretrained Language Model for Scienti...	2019-03-26	Code
22	GoLLIE	86.5	Yes	GoLLIE: Annotation Guidelines improve Zero-Shot ...	2023-10-05	Code
23	SciBERT (SciVocab)	86.45	Yes	SciBERT: A Pretrained Language Model for Scienti...	2019-03-26	Code
24	BERT-CRF	84.5	No	Focusing on Potential Named Entities During Acti...	2021-11-06	Code
25	GPT-4	65.98	No	-	-	-
26	NuNER Zero Span	61.1	Yes	NuNER: Entity Recognition Encoder Pre-training v...	2024-02-23	Code